Transcriptomics reveals light-induced chlorenchyma cells involved in promoting shoot regeneration in tomato callus. Song X, Guo P, Xia K, Wang M, Liu Y, Chen L, Zhang J, Xu M, Liu N, Yue Z, Xu X, Gu Y, Li G, Liu M, Fang L, Deng XW, Li B. Spatial Proc Natl Acad Sci U S A. 2023 Sep 19;120(38):e2310163120. doi: 10.1073/pnas.2310163120. Epub 2023 Sep 13. PMID: 37703282; PMCID: PMC10515167.

Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation. Liu Z, Kong X, Long Y, Liu S, Zhang H, Jia J, Cui W, Zhang Z, Song X, Qiu L, Zhai J, Yan Z. Nat Plants. 2023 Apr;9(4):515-524. doi: 10.1038/s41477-023-01387-z. Epub 2023 Apr 13. PMID: 37055554.

Spatial transcriptome analysis on peanut tissues shed light on cell heterogeneity of the peg. Liu Y, et. al. Plant Biotechnol J. 2022 Sep;20(9):1648-1650. doi: 10.1111/pbi.13884. Epub 2022 Jul 23. PMID: 35792883; PMCID: PMC9398287.

The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves. Xia K, et. al. Dev Cell. 2022 May 23;57(10):1299-1310.e4. doi: 10.1016/j.devcel.2022.04.011. Epub 2022 May 4. PMID: 35512702.

An Arabidopsis leaf expression atlas across diurnal and developmental scales Gina Vong, Kayla McCarthy, Will Claydon, Seth J. Davis, Ethan J. Redmond, Daphne Ezer bioRxiv 2023.11.10.566572; doi: https://doi.org/10.1101/2023.11.10.566572

PHYTOMap: Multiplexed single-cell 3D spatial gene expression analysis in plant tissue Tatsuya Nobori, Marina Oliva, Ryan Lister, Joseph R. Ecker bioRxiv 2022.07.28.501915; doi: https://doi.org/10.1101/2022.07.28.501915

Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule symbiosis establishment.
Zhijian Liu, Xiangying Kong, Yanping Long, Hong Zhang, Jinbu Jia, Lijuan Qiu, Jixian Zhai, Zhe Yan bioRxiv 2022.06.30.498286; doi: https://doi.org/10.1101/2022.06.30.498286